|
週次 |
日期 |
單元主題 |
|
第1週 |
9/11 |
Definition, concepts, and scientific challenges (張典顯)
(分生所123教室)
|
|
第1週 |
9/13 |
R programming (1) (劉維中) |
|
第2週 |
9/20 |
Introduction to R programming (2) (劉維中) |
|
第2週 |
9/21 |
9/21-張典顯老師(分生所123教室)
作業請在10/8寄給張典顯老師(chang108@gate.sinica.edu.tw) |
|
第3週 |
9/25 |
Introduction to genetics and evolution (丁照棣) |
|
第3週 |
9/27 |
Introduction to Basic statistics (1) (劉維中)
作業請在12/31之前寄給助教(roromanworld@gmail.com) |
|
第4週 |
10/02 |
DNA sequencing technologies (呂美曄) (生科館3A) |
|
第4週 |
10/04 |
Introduction to Basic statistics (2) (劉維中) |
|
第5週 |
10/09 |
Genomics and genome project (丁照棣) |
|
第5週 |
10/11 |
Enrichment analysis and applications (黃明經) |
|
第6週 |
10/16 |
Population Genomics (丁照棣) |
|
第6週 |
10/18 |
Network analysis and applications (黃明經) |
|
第7週 |
10/23 |
Chromatin modification and functions (高承福)
(分生所123教室)
高老師評分方式為考試 |
|
第7週 |
10/25 |
Bioinformatics databases/tools for systems biology I (黃明經) |
|
第8週 |
10/30 |
Comparative genomics (蔡怡陞) (分生所123教室)
教材:
https://2015ngsintro.readthedocs.io/en/latest/lec.html
作業(12/29 晚上12點前繳交至蔡老師信箱)
Please choose a paper that combines both comparative genomics and RNAseq to address a biological question. The paper has to be published from 2015-2018. Please write a review, be critique on the techniques used and assess the strength and weaknesses of the paper.
Please hand in before 12/29 (one month's time to write the homework). Late hand in of the work will be marked 0. |
|
第8週 |
11/1 |
The ENCODE IEncyclopedia of DNA Elements) project (高承福) |
|
第9週 |
11/06,11/08 |
Midterm week (11/8 高承福老師考試) |
|
第10週 |
11/13 (台大生科館3A) |
Small non-coding RNAs (詹世鵬) |
|
第10週 |
11/15 |
NTU 90th Anniversary Activities |
|
第11週 |
11/20 |
Transcriptional regulation during development
(李士傑) |
|
第11週 |
11/22 |
Bioinformatics databases/tools for systems biology II -student presentation (黃明經) |
|
第12週 |
11/27 |
MS-Based Proteomics (陳逸然) (分生所123教室) |
|
第12週 |
11/29 |
Introduction to transcriptomics (蔡怡陞)
https://2015ngsintro.readthedocs.io/en/latest/lec.html#gsb-2018 |
|
第13週 |
12/04 |
Gel-based proteomics (張英峯) |
|
第13週 |
12/06 |
Dynamics in systems (1) (許昭萍)
What is modeling?
Your very first dynamic model.
****Anaconda windows 安裝可參考:
https://zhuanlan.zhihu.com/p/32925500
按照該連結就可以成功安裝**** |
|
第14週 |
12/11 |
Sub-proteome (張英峯)
****課程延至 14:00-16:00 ****
作業已經放在作業區，1/11晚上9:00前上傳完畢~ |
|
第14週 |
12/13 |
Dynamics in systems (2) (許昭萍)
****上課前請先安裝好python, scipy 以及 numpy ****
Propagating ODEs using Python
|
|
第15週 |
12/18 |
Bioinformatics in Proteomics (陳逸然) (分生所123教室) |
|
第15週 |
12/20 |
Dynamics in systems (3) (許昭萍)
Negative feedbacks
Relaxation time scales
Oscillations |
|
第16週 |
12/25 |
Structural and Chemical Proteomics (徐駿森) |
|
第16週 |
12/27 |
Modeling and simulation (1) (許昭萍)
Positive feedbacks |
|
第17週 |
1/01 |
New Year's Day |
|
第17週 |
1/03 |
Modeling and simulation (2) (許昭萍)
Feed-forward loops
Properties of coherent and incoherent FFLs |
|
第18週 |
1/08,1/10 |
Final Exam Week |